ERX1126200
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
KU812
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

ArrayExpress-CellType
KU812
ArrayExpress-GrowthCondition
RPMI1640_10% FBS
ArrayExpress-Immunoprecipitate
H3K4me3
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo Sapien
ENA first public
2015-09-22
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3368308
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-09-22T09:32:38Z
INSDC last update
2018-03-09T00:07:48Z
INSDC status
public
Submitter Id
KU812_BR1_TR1_H3K4me3-sc-2284583
common name
human
sample description
KU812 ChIP DNA
sample name
KU812_BR1_TR1_H3K4me3-sc-2284583

Sequenced DNA Library

library_name
13954944
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8759090
Reads aligned (%)
99.0
Duplicates removed (%)
5.3
Number of peaks
23708 (qval < 1E-05)

hg19

Number of total reads
8759090
Reads aligned (%)
98.7
Duplicates removed (%)
5.4
Number of peaks
23622 (qval < 1E-05)

Base call quality data from DBCLS SRA