ERX1126163
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
F36P
ArrayExpress-GrowthCondition
RPMI1640_10% FBS_1% Glutamax_1% sodium pyruvate_10ng/ml rhGM-CSF
ArrayExpress-Immunoprecipitate
H3K4me3
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo Sapien
ENA first public
2015-09-22
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3368296
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-09-22T09:32:38Z
INSDC last update
2018-03-09T00:07:48Z
INSDC status
public
Submitter Id
F36P_BR2_TR1_H3K4me3-sc-2284536
common name
human
sample description
F36P ChIP DNA
sample name
F36P_BR2_TR1_H3K4me3-sc-2284536

Sequenced DNA Library

library_name
13954895
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8355741
Reads aligned (%)
99.0
Duplicates removed (%)
4.0
Number of peaks
28795 (qval < 1E-05)

hg19

Number of total reads
8355741
Reads aligned (%)
98.8
Duplicates removed (%)
4.0
Number of peaks
28688 (qval < 1E-05)

Base call quality data from DBCLS SRA