ERX1103213
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
HEL 92.1.7
Primary Tissue
Blood
Tissue Diagnosis
Erythroleukemia

Attributes by original data submitter

Sample

ArrayExpress-CellType
HEL9217
ArrayExpress-GrowthCondition
RPMI1640_10% HiFBS_1% L-glut
ArrayExpress-Immunoprecipitate
H3K4me3
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo Sapien
ENA first public
2015-09-22
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3368300
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-09-22T09:32:37Z
INSDC last update
2018-03-09T00:40:24Z
INSDC status
public
Submitter Id
HEL9217_BR2_TR1_H3K4me3-sc-2284559
common name
human
sample description
HEL9217 ChIP DNA
sample name
HEL9217_BR2_TR1_H3K4me3-sc-2284559

Sequenced DNA Library

library_name
13954943
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6594892
Reads aligned (%)
99.1
Duplicates removed (%)
3.9
Number of peaks
20801 (qval < 1E-05)

hg19

Number of total reads
6594892
Reads aligned (%)
98.8
Duplicates removed (%)
3.9
Number of peaks
20735 (qval < 1E-05)

Base call quality data from DBCLS SRA