ERX1094711
Illumina Genome Analyzer II sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

External Id
SAMEA1930879
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-09-15T09:23:31Z
INSDC last update
2018-03-08T15:24:40Z
INSDC status
public
Submitter Id
BG_mHPC7_Meis1_210109-sc-2010-03-04-2647
common name
house mouse
sample name
BG_mHPC7_Meis1_210109-sc-2010-03-04-2647

Sequenced DNA Library

library_name
54025
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10342209
Reads aligned (%)
90.8
Duplicates removed (%)
16.2
Number of peaks
5255 (qval < 1E-05)

mm9

Number of total reads
10342209
Reads aligned (%)
90.7
Duplicates removed (%)
16.4
Number of peaks
5239 (qval < 1E-05)

Base call quality data from DBCLS SRA