ERX1092154
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
Pluripotent cell line
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Pluripotent cell line
ArrayExpress-GrowthCondition
EPSCM
ArrayExpress-Immunoprecipitate
INPUT
ArrayExpress-Phenotype
Normal
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ArrayExpress-Treatment
EPSCM
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2015-09-09T15:11:26Z
ENA-LAST-UPDATE
2018-03-09T04:09:01Z
External Id
SAMEA3532115
INSDC center name
SC
INSDC first public
2015-09-09T15:11:26Z
INSDC last update
2018-03-09T04:09:01Z
INSDC status
public
Submitter Id
EP2_INPUT-sc-2226474
common name
house mouse
sample description
Pluripotent cell line
sample name
EP2_INPUT-sc-2226474
scientific_name
Mus musculus

Sequenced DNA Library

library_name
13014755
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14934151
Reads aligned (%)
98.4
Duplicates removed (%)
9.5
Number of peaks
411 (qval < 1E-05)

mm9

Number of total reads
14934151
Reads aligned (%)
98.1
Duplicates removed (%)
9.7
Number of peaks
413 (qval < 1E-05)

Base call quality data from DBCLS SRA