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Colocalization
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: Pluripotent cell line
ATCC
MeSH
RIKEN BRC
ERX1092150
Illumina HiSeq 2500 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Pluripotent stem cell
Cell type
Pluripotent cell line
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
Pluripotent cell line
ArrayExpress-GrowthCondition
EPSCM
ArrayExpress-Immunoprecipitate
H3K27ME3
ArrayExpress-Phenotype
Normal
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ArrayExpress-Treatment
EPSCM
ENA first public
2015-09-09
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3532114
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-09-09T15:11:26Z
INSDC last update
2018-03-09T04:00:25Z
INSDC status
public
Submitter Id
EP1_H3K27ME3-sc-2226467
common name
house mouse
sample description
Pluripotent cell line
sample name
EP1_H3K27ME3-sc-2226467
Sequenced DNA Library
library_name
13014748
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
11931092
Reads aligned (%)
98.6
Duplicates removed (%)
7.6
Number of peaks
198 (qval < 1E-05)
mm9
Number of total reads
11931092
Reads aligned (%)
98.4
Duplicates removed (%)
7.7
Number of peaks
203 (qval < 1E-05)
Base call quality data from
DBCLS SRA