ERX1092149
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
Pluripotent cell line
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Pluripotent cell line
ArrayExpress-GrowthCondition
EPSCM
ArrayExpress-Immunoprecipitate
H3K4ME3
ArrayExpress-Phenotype
Normal
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ArrayExpress-Treatment
EPSCM
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2015-09-09T15:11:26Z
ENA-LAST-UPDATE
2018-03-09T04:09:01Z
External Id
SAMEA3532113
INSDC center name
SC
INSDC first public
2015-09-09T15:11:26Z
INSDC last update
2018-03-09T04:09:01Z
INSDC status
public
Submitter Id
EP1_H3K4ME3-sc-2226464
common name
house mouse
sample description
Pluripotent cell line
sample name
EP1_H3K4ME3-sc-2226464
scientific_name
Mus musculus

Sequenced DNA Library

library_name
13014745
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13252619
Reads aligned (%)
99.0
Duplicates removed (%)
12.1
Number of peaks
29451 (qval < 1E-05)

mm9

Number of total reads
13252619
Reads aligned (%)
98.8
Duplicates removed (%)
12.2
Number of peaks
29462 (qval < 1E-05)

Base call quality data from DBCLS SRA