ERX1056646
Illumina HiSeq 2000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2016-02-29
ENA last update
2015-08-11
ENA-CHECKLIST
ERC000011
External Id
SAMEA3501690
INSDC center alias
MDC
INSDC center name
Max Delbrück Center for Molecular Medicine, Berlin-Buch, Germany
INSDC first public
2016-02-29T17:01:40Z
INSDC last update
2015-08-11T13:25:27Z
INSDC status
public
Submitter Id
WC_HD_001
common name
human
sample name
WC_HD_001

Sequenced DNA Library

library_name
WC_HD_0014
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Illumina Trueseq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
74549414
Reads aligned (%)
16.8
Duplicates removed (%)
90.3
Number of peaks
78 (qval < 1E-05)

hg19

Number of total reads
74549414
Reads aligned (%)
16.7
Duplicates removed (%)
92.0
Number of peaks
96 (qval < 1E-05)

Base call quality data from DBCLS SRA