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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: SUM 44PE
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX1055971
Illumina HiSeq 2500 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Breast
Cell type
SUM 44PE
Primary Tissue
Breast
Tissue Diagnosis
Unknown
Attributes by original data submitter
Sample
ENA first public
2015-10-10
ENA last update
2015-08-11
ENA-CHECKLIST
ERC000011
External Id
SAMEA3501449
INSDC center alias
Medical University of South Carolina
INSDC center name
Medical University of South Carolina
INSDC first public
2015-10-10T17:01:14Z
INSDC last update
2015-08-11T04:22:01Z
INSDC status
public
Submitter Id
1286_rep2_SUM44_shLacZ_estrogen-treated_ERa_ChIP
cell line
SUM-44PE
common name
human
sample name
1286_rep2_SUM44_shLacZ_estrogen-treated_ERa_ChIP
Sequenced DNA Library
library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Rubicon Genomics Thru-PlexFD standard protocol
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
37716915
Reads aligned (%)
94.5
Duplicates removed (%)
68.4
Number of peaks
13519 (qval < 1E-05)
hg19
Number of total reads
37716915
Reads aligned (%)
93.9
Duplicates removed (%)
69.6
Number of peaks
13512 (qval < 1E-05)
Base call quality data from
DBCLS SRA