Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Neural

Cell type

Neural Stem Cells

MeSH Description

Self-renewing cells that generate the main phenotypes of the nervous system in both the embryo and adult. Neural stem cells are precursors to both NEURONS and NEUROGLIA.

Sample

ArrayExpress-CellType

nsc neural stem cells

ArrayExpress-GrowthCondition

to be provided

ArrayExpress-Species

Mus Musculus

ENA first public

2015-07-28

ENA last update

2018-03-09

ENA-CHECKLIST

ERC000011

External Id

SAMEA3489871

INSDC center alias

SC

INSDC center name

Wellcome Sanger Institute

INSDC first public

2015-07-28T09:43:44Z

INSDC last update

2018-03-09T02:04:39Z

INSDC status

public

Submitter Id

_Mash_D1_D8-sc-1259270

common name

house mouse

sample description

nsc neural stem cells DNAse assay

sample name

_Mash_D1_D8-sc-1259270

Sequenced DNA Library

library_name

3916163

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

qPCR only

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

178283299

Reads aligned (%)

0.6

Duplicates removed (%)

8.8

Number of peaks

252 (qval < 1E-05)

mm9

Number of total reads

178283299

Reads aligned (%)

0.6

Duplicates removed (%)

8.8

Number of peaks

250 (qval < 1E-05)