Antigen

Antigen Class

TFs and others

Antigen

GFP

Cell type

Cell type Class

Neural

Cell type

Brain

MeSH Description

The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Sample

ArrayExpress-Age

2-3 months

ArrayExpress-CellType

Brain Cells

ArrayExpress-DevelopmentalStage

Adult

ArrayExpress-DiseaseState

symptom free

ArrayExpress-Genotype

MeCP2 R133C GFP

ArrayExpress-Immunoprecipitate

GFP IP

ArrayExpress-OrganismPart

Brain

ArrayExpress-Sex

male

ArrayExpress-Species

mouse

ENA first public

2015-06-30

ENA last update

2018-03-08

ENA-CHECKLIST

ERC000011

External Id

SAMEA3283595

INSDC center alias

SC

INSDC center name

Wellcome Sanger Institute

INSDC first public

2015-06-30T09:39:13Z

INSDC last update

2018-03-08T23:24:53Z

INSDC status

public

Submitter Id

SL270215_6-sc-2241334

common name

house mouse

sample description

ChIP DNA from total brain from R133C GFP mutant mouse

sample name

SL270215_6-sc-2241334

strain

Bl6

Sequenced DNA Library

library_name

13204618

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

qPCR only

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

24164870

Reads aligned (%)

87.7

Duplicates removed (%)

40.0

Number of peaks

71 (qval < 1E-05)

mm9

Number of total reads

24164870

Reads aligned (%)

87.5

Duplicates removed (%)

40.4

Number of peaks

48 (qval < 1E-05)