ERX1027840
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Glia
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Age
2-3 months
ArrayExpress-CellType
Glia
ArrayExpress-DevelopmentalStage
Adult
ArrayExpress-Genotype
MeCP2 wildtype GFP
ArrayExpress-OrganismPart
Brain
ArrayExpress-Sex
male
ArrayExpress-Species
mouse
ENA first public
2015-06-30
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3283593
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-06-30T09:39:13Z
INSDC last update
2018-03-08T23:24:40Z
INSDC status
public
Submitter Id
SL270215_4-sc-2241332
common name
house mouse
sample description
Input DNA from sorted glia from MeCP2 GFP mouse brain
sample name
SL270215_4-sc-2241332
strain
Bl6

Sequenced DNA Library

library_name
13204616
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25674287
Reads aligned (%)
86.8
Duplicates removed (%)
18.2
Number of peaks
205 (qval < 1E-05)

mm9

Number of total reads
25674287
Reads aligned (%)
86.7
Duplicates removed (%)
18.4
Number of peaks
166 (qval < 1E-05)

Base call quality data from DBCLS SRA