ERX102378
PolII Rpb3 ChIP-seq data from D. melanogaster

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Larvae
Cell type
Salivary glands
NA
NA

Attributes by original data submitter

Sample

ENA-FIRST-PUBLIC
2012-08-01T17:00:54Z
ENA-LAST-UPDATE
2018-03-08T15:46:35Z
External Id
SAMEA1487325
INSDC center name
EMBL Heidelberg
INSDC first public
2012-08-01T17:00:54Z
INSDC last update
2018-03-08T15:46:35Z
INSDC status
public
Submitter Id
E-MTAB-1112:PolII_wt_femaleA1
broker name
ArrayExpress
common name
fruit fly
developmental stage
third instar larva
genotype
wild_type
organism part
salivary gland
sample name
E-MTAB-1112:PolII_wt_femaleA1
scientific_name
Drosophila melanogaster
sex
female

Sequenced DNA Library

library_name
PolII_wt_femaleA1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Drosophila larva were grown at 25 C purification protocol is detailed in Conrad et al.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
24502071
Reads aligned (%)
84.1
Duplicates removed (%)
43.4
Number of peaks
9808 (qval < 1E-05)

dm3

Number of total reads
24502071
Reads aligned (%)
84.1
Duplicates removed (%)
43.2
Number of peaks
9846 (qval < 1E-05)

Base call quality data from DBCLS SRA