ERX079892
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ENA first public
2012-03-03
ENA last update
2018-03-08
External Id
SAMEA1094963
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2012-03-03T17:00:48Z
INSDC last update
2018-03-08T15:25:26Z
INSDC status
public
Submitter Id
DBA_2-sc-2011-01-27-112982
common name
house mouse
sample description
H3K4me1
sample name
DBA_2-sc-2011-01-27-112982
strain
DBA/2

Sequenced DNA Library

library_name
248051
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13310081
Reads aligned (%)
53.5
Duplicates removed (%)
70.3
Number of peaks
243 (qval < 1E-05)

mm9

Number of total reads
13310081
Reads aligned (%)
53.5
Duplicates removed (%)
70.4
Number of peaks
253 (qval < 1E-05)

Base call quality data from DBCLS SRA