Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

ENA-FIRST-PUBLIC
2012-02-18T17:00:29Z
ENA-LAST-UPDATE
2018-03-08T15:36:05Z
External Id
SAMEA1094834
INSDC center name
CRUK-CRI
INSDC first public
2012-02-18T17:00:29Z
INSDC last update
2018-03-08T15:36:05Z
INSDC status
public
Submitter Id
E-MTAB-986:MCF7
broker name
ArrayExpress
cell line
MCF7
cell type
epithelial
common name
human
organism part
breast
sample name
E-MTAB-986:MCF7
scientific_name
Homo sapiens
sex
female

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
13406298
Reads aligned (%)
92.6
Duplicates removed (%)
23.7
Number of peaks
6022 (qval < 1E-05)

hg19

Number of total reads
13406298
Reads aligned (%)
92.1
Duplicates removed (%)
24.3
Number of peaks
6122 (qval < 1E-05)

Base call quality data from DBCLS SRA