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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: MCF-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX069448
ChIP-seq study using a cell line model of ER AR+ molecular apocrine tumours (AR FoxA1 molecular apocrine)
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
ENA-FIRST-PUBLIC
2012-02-18T17:00:29Z
ENA-LAST-UPDATE
2018-03-08T15:36:05Z
External Id
SAMEA1094834
INSDC center name
CRUK-CRI
INSDC first public
2012-02-18T17:00:29Z
INSDC last update
2018-03-08T15:36:05Z
INSDC status
public
Submitter Id
E-MTAB-986:MCF7
broker name
ArrayExpress
cell line
MCF7
cell type
epithelial
common name
human
organism part
breast
sample name
E-MTAB-986:MCF7
scientific_name
Homo sapiens
sex
female
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
13406298
Reads aligned (%)
92.6
Duplicates removed (%)
23.7
Number of peaks
6022 (qval < 1E-05)
hg19
Number of total reads
13406298
Reads aligned (%)
92.1
Duplicates removed (%)
24.3
Number of peaks
6122 (qval < 1E-05)
Base call quality data from
DBCLS SRA