Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Digestive tract

Cell type

Intestines

MeSH Description

The section of the alimentary canal from the STOMACH to the ANAL CANAL. It includes the LARGE INTESTINE and SMALL INTESTINE.

Sample

ArrayExpress-Genotype

HOM

ArrayExpress-Immunoprecipitate

h3k4me3

ArrayExpress-OrganismPart

intestine

ArrayExpress-Species

Mus musculus

ENA first public

2010-03-05

ENA last update

2018-03-08

External Id

SAMEA1035353

INSDC center alias

SC

INSDC center name

Wellcome Sanger Institute

INSDC first public

2010-03-05T11:06:17Z

INSDC last update

2018-03-08T15:24:53Z

INSDC status

public

Submitter Id

AM635_HOM_H3K4me3-sc-2012-10-22T13:07:45Z-7672

common name

house mouse

sample description

chip-seq for h3k4me3

sample name

AM635_HOM_H3K4me3-sc-2012-10-22T13:07:45Z-7672

Sequenced DNA Library

library_name

58074

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChiP-seq

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

6039940

Reads aligned (%)

76.8

Duplicates removed (%)

36.8

Number of peaks

9473 (qval < 1E-05)

mm9

Number of total reads

6039940

Reads aligned (%)

76.2

Duplicates removed (%)

37.3

Number of peaks

9472 (qval < 1E-05)