Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Digestive tract

Cell type

Intestines

MeSH Description

The section of the alimentary canal from the STOMACH to the ANAL CANAL. It includes the LARGE INTESTINE and SMALL INTESTINE.

Sample

ArrayExpress-Genotype

WT

ArrayExpress-OrganismPart

intestine

ArrayExpress-Species

Mus musculus

ENA first public

2010-03-04

ENA last update

2018-03-08

External Id

SAMEA1035356

INSDC center alias

SC

INSDC center name

Wellcome Sanger Institute

INSDC first public

2010-03-04T11:59:50Z

INSDC last update

2018-03-08T15:34:11Z

INSDC status

public

Submitter Id

WT_H3K4_input-sc-2012-10-22T13:07:38Z-5217

common name

house mouse

sample description

chip-seq for h3k4me3

sample name

WT_H3K4_input-sc-2012-10-22T13:07:38Z-5217

Sequenced DNA Library

library_name

55825

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChiP-seq

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

18000633

Reads aligned (%)

96.3

Duplicates removed (%)

8.9

Number of peaks

498 (qval < 1E-05)

mm9

Number of total reads

18000633

Reads aligned (%)

96.1

Duplicates removed (%)

9.0

Number of peaks

530 (qval < 1E-05)