ERX026987
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
T

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Immunoprecipitate
ANTI-BRACHYURY
ArrayExpress-Species
Homo sapiens
ENA first public
2011-10-20
ENA last update
2018-03-08
External Id
SAMEA1094405
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2011-10-20T12:21:39Z
INSDC last update
2018-03-08T15:25:24Z
INSDC status
public
Submitter Id
ChIP_UCH1_2-sc-2011-10-24T14:03:26Z-7650
common name
human
sample description
ChIP sample
sample name
ChIP_UCH1_2-sc-2011-10-24T14:03:26Z-7650

Sequenced DNA Library

library_name
58036
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Custom

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9347278
Reads aligned (%)
76.0
Duplicates removed (%)
10.1
Number of peaks
3705 (qval < 1E-05)

hg19

Number of total reads
9347278
Reads aligned (%)
75.6
Duplicates removed (%)
10.2
Number of peaks
3701 (qval < 1E-05)

Base call quality data from DBCLS SRA