ERX008703
Survey of transcription factor binding sites in yeast using ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2011-11-09
ENA last update
2018-03-08
External Id
SAMEA1022676
INSDC center alias
PENN STATE
INSDC center name
PENN STATE
INSDC first public
2011-11-09T17:00:35Z
INSDC last update
2018-03-08T15:25:19Z
INSDC status
public
StrainOrLine
BY4741
Submitter Id
E-MTAB-440:Source_Ctr9_25C_UAS1
broker name
ArrayExpress
common name
baker's yeast
genotype
Ctr9TAP
sample name
E-MTAB-440:Source_Ctr9_25C_UAS1

Sequenced DNA Library

library_name
DNA_Extract_Ctr9_25C_UAS1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

sacCer3

Number of total reads
923047
Reads aligned (%)
29.7
Duplicates removed (%)
45.4
Number of peaks
279 (qval < 1E-05)

Base call quality data from DBCLS SRA