DRX299900
HiSeq X Ten paired end sequencing of SAMD00389439

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Others
Cell type
FaDu
Primary Tissue
Nasal Pharynx
Site of Extraction
Nasal Pharynx
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

sample_name
FaDu_GFP_CTCF_ChIPseq_2
biological_replicate
2
cell_line
FaDu cells
cell_type
HNSCC
sample_type
ChIPseq
treatment
GFP expression

Sequenced DNA Library

library_name
FaDu_GFP_CTCF_ChIPseq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16248921
Reads aligned (%)
91.1
Duplicates removed (%)
63.2
Number of peaks
585 (qval < 1E-05)

hg19

Number of total reads
16248921
Reads aligned (%)
90.2
Duplicates removed (%)
64.0
Number of peaks
400 (qval < 1E-05)

Base call quality data from DBCLS SRA