DRX248823
Illumina NovaSeq 6000 sequencing of SAMD00202664

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPIN1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
Spin1_ChIP-1
antibody
Spin1
biomaterial_provider
ATCC
cell_line
HeLa
cell_type
Human cervix epitheloid carcinoma

Sequenced DNA Library

library_name
Spin1_ChIP-1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32413411
Reads aligned (%)
99.1
Duplicates removed (%)
17.6
Number of peaks
389 (qval < 1E-05)

hg19

Number of total reads
32413411
Reads aligned (%)
98.7
Duplicates removed (%)
18.6
Number of peaks
393 (qval < 1E-05)

Base call quality data from DBCLS SRA