DRX228815
Nr4a TKO iTreg 3h ATAC seq 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
iTreg
NA
NA

Attributes by original data submitter

Sample

sample_name
Nr4a-TKO_iTreg_3h_2
biological_replicate
2
cell_type
iTreg cell
genotype
Nr4a triple knockout
sex
male
strain
C57BL/6J
tissue
CD4 T cell

Sequenced DNA Library

library_name
Nr4a_TKO_iTreg_3h_ATAC_2
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
75144528
Reads aligned (%)
88.4
Duplicates removed (%)
73.0
Number of peaks
16814 (qval < 1E-05)

mm9

Number of total reads
75144528
Reads aligned (%)
88.4
Duplicates removed (%)
73.1
Number of peaks
16787 (qval < 1E-05)

Base call quality data from DBCLS SRA