DRX227594
Illumina HiSeq 1500 sequencing of SAMD00235773

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LDB2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived neural cells
NA
NA

Attributes by original data submitter

Sample

sample_name
LDB2_ChIP
biomaterial_provider
RIKEN BioResouece Center
cell_line
hiPSC (HPS0063)-derived neurosphere

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15742990
Reads aligned (%)
91.6
Duplicates removed (%)
7.0
Number of peaks
6216 (qval < 1E-05)

hg19

Number of total reads
15742990
Reads aligned (%)
90.7
Duplicates removed (%)
7.8
Number of peaks
6152 (qval < 1E-05)

Base call quality data from DBCLS SRA