Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3.3

Cell type

Cell type Class
Neural
Cell type
KNS-42
Primary Tissue
Brain
Tissue Diagnosis
Glioma

Attributes by original data submitter

Sample

sample_name
KNS-42_G34V_delta2_antiG34V
antibody
Anti-histone H3.3 G34V rabbit monoclonal antibody (RevMab)
biomaterial_provider
JCRB cell bank
cell_line
KNS-42
cell_type
glioma
genotype
G34V knocked out
technical_replicate
2

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
30229224
Reads aligned (%)
79.4
Duplicates removed (%)
11.8
Number of peaks
792 (qval < 1E-05)

hg19

Number of total reads
30229224
Reads aligned (%)
78.4
Duplicates removed (%)
12.0
Number of peaks
418 (qval < 1E-05)

Base call quality data from DBCLS SRA