Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Neural

Cell type

KNS-42

Primary Tissue

Brain

Tissue Diagnosis

Glioma

Sample

sample_name

KNS-42_G34V_delta1_antiH3K4me3

antibody

Anti-trimethyl-histone H3 (lysine4) mouse monoclonal antibody (Takara Bio)

biomaterial_provider

JCRB cell bank

cell_line

KNS-42

cell_type

glioma

genotype

G34V knocked out

technical_replicate

1

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

SMARTer ThruPLEX DNA-seq Kit (Takara Bio)

Sequencing Platform

instrument_model

Illumina NovaSeq 6000

hg38

Number of total reads

22233733

Reads aligned (%)

83.0

Duplicates removed (%)

5.8

Number of peaks

20471 (qval < 1E-05)

hg19

Number of total reads

22233733

Reads aligned (%)

82.7

Duplicates removed (%)

5.9

Number of peaks

20218 (qval < 1E-05)