DRX184582
NextSeq 500 sequencing of SAMD00189961

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

sample_name
RIPA_GFP-ChIP
strain
C57B6/J
age
21-22 days
genotype
WT
sex
male

Sequenced DNA Library

library_name
RIPA_GFP-ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
KAPA Library Preparation Kit

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24804417
Reads aligned (%)
91.8
Duplicates removed (%)
15.6
Number of peaks
386 (qval < 1E-05)

mm9

Number of total reads
24804417
Reads aligned (%)
91.6
Duplicates removed (%)
15.7
Number of peaks
332 (qval < 1E-05)

Base call quality data from DBCLS SRA