DRX174620
NextSeq 500 sequencing of SAMD00177966

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hmga2

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

sample_name
FLAG_Hmga2-Tet2-KO
antibody
FLAG
fraction
Lin-Kit+
genotype
Tet2-KO;Cre-ERT2
infection
Flag-Hmga2
strain
C57BL/6

Sequenced DNA Library

library_name
FLAG_Hmga2-Tet2-KO
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27061813
Reads aligned (%)
94.1
Duplicates removed (%)
32.2
Number of peaks
288 (qval < 1E-05)

mm9

Number of total reads
27061813
Reads aligned (%)
93.8
Duplicates removed (%)
32.2
Number of peaks
308 (qval < 1E-05)

Base call quality data from DBCLS SRA