DRX171248
Illumina HiSeq 1500 sequencing of SAMD00173535

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
LSK cells
NA
NA

Attributes by original data submitter

Sample

sample_name
Pcgf1CE_CD135-LSK
strain
C57BL6/NCR
tissue_type
bone marrow

Sequenced DNA Library

library_name
Pcgf1CE_CD135-LSK_ATAC
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
41153085
Reads aligned (%)
95.2
Duplicates removed (%)
70.5
Number of peaks
20810 (qval < 1E-05)

mm9

Number of total reads
41153085
Reads aligned (%)
95.1
Duplicates removed (%)
70.5
Number of peaks
20798 (qval < 1E-05)

Base call quality data from DBCLS SRA