DRX165602
NextSeq 500 sequencing of SAMD00167167

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

sample_name
FLAG_IP_Tet2KO_RX3_colony
antibody
FLAG
fraction
Colony
genotype
Tet2-fl/fl;Cre-ERT2
infection
RUNX3
strain
C57BL/6

Sequenced DNA Library

library_name
FLAG_IP_Tet2KO_RX3_colony
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17750302
Reads aligned (%)
98.4
Duplicates removed (%)
39.0
Number of peaks
6650 (qval < 1E-05)

mm9

Number of total reads
17750302
Reads aligned (%)
98.2
Duplicates removed (%)
39.1
Number of peaks
6575 (qval < 1E-05)

Base call quality data from DBCLS SRA