DRX165601
NextSeq 500 sequencing of SAMD00167166

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

sample_name
Inputrunx1_Tet2KO_RX3_colony
fraction
Colony
genotype
Tet2-fl/fl;Cre-ERT2
infection
RUNX3
strain
C57BL/6
technical_replicate
technical_replicate 1

Sequenced DNA Library

library_name
Inputrunx1_Tet2KO_RX3_colony
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19207893
Reads aligned (%)
98.4
Duplicates removed (%)
22.6
Number of peaks
426 (qval < 1E-05)

mm9

Number of total reads
19207893
Reads aligned (%)
98.2
Duplicates removed (%)
22.7
Number of peaks
389 (qval < 1E-05)

Base call quality data from DBCLS SRA