DRX165590
NextSeq 500 sequencing of SAMD00167155

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

sample_name
H3K27Ac_WT_RX3
antibody
H3K27Ac
fraction
Lin-Kit+
genotype
Tet2-wt/wt;Cre-ERT2
infection
RUNX3
strain
C57BL/6

Sequenced DNA Library

library_name
H3K27Ac_WT_RX3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30331861
Reads aligned (%)
93.1
Duplicates removed (%)
40.2
Number of peaks
426 (qval < 1E-05)

mm9

Number of total reads
30331861
Reads aligned (%)
92.8
Duplicates removed (%)
40.2
Number of peaks
429 (qval < 1E-05)

Base call quality data from DBCLS SRA