DRX156328
Illumina HiSeq 2000 paired end sequencing of SAMD00158931

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Neural
Cell type
T99
NA
NA

Attributes by original data submitter

Sample

sample_name
T98-siRFP-ChIP
cell_line
T99
cell_type
human GBM

Sequenced DNA Library

library_name
Illumina HiSeq 2000 paired end sequencing of SAMD00158931
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
"sonication, adapter ligation, PCR with NEB Next Ultra3 DNA Prep Kit for Illumina"

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22280298
Reads aligned (%)
87.9
Duplicates removed (%)
0.1
Number of peaks
808 (qval < 1E-05)

hg19

Number of total reads
22280298
Reads aligned (%)
86.7
Duplicates removed (%)
0.2
Number of peaks
357 (qval < 1E-05)

Base call quality data from DBCLS SRA