Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Thymocytes
MeSH Description
HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Attributes by original data submitter

Sample

sample_name
Kdm2bKO_thymocytes
strain
C57BL6/NCR
tissue_type
Thymus

Sequenced DNA Library

library_name
Kdm2bKO_H3K4me3_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
16115229
Reads aligned (%)
98.0
Duplicates removed (%)
15.3
Number of peaks
268 (qval < 1E-05)

mm9

Number of total reads
16115229
Reads aligned (%)
97.7
Duplicates removed (%)
15.3
Number of peaks
249 (qval < 1E-05)

Base call quality data from DBCLS SRA