Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
Macrophages
MeSH Description
The relatively long-lived phagocytic cell of mammalian tissues that are derived from blood MONOCYTES. Main types are PERITONEAL MACROPHAGES; ALVEOLAR MACROPHAGES; HISTIOCYTES; KUPFFER CELLS of the liver; and OSTEOCLASTS. They may further differentiate within chronic inflammatory lesions to EPITHELIOID CELLS or may fuse to form FOREIGN BODY GIANT CELLS or LANGHANS GIANT CELLS. (from The Dictionary of Cell Biology, Lackie and Dow, 3rd ed.)

Attributes by original data submitter

Sample

sample_name
BMM_WT_H3K27ac_ChIP
antibody
H3K27ac
cell_type
macrophage
sex
male
strain
C57BL/6
tissue_type
bone marrow

Sequenced DNA Library

library_name
BMM_WT_H3K27ac_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
41212858
Reads aligned (%)
90.3
Duplicates removed (%)
31.0
Number of peaks
35361 (qval < 1E-05)

mm9

Number of total reads
41212858
Reads aligned (%)
90.2
Duplicates removed (%)
31.0
Number of peaks
35362 (qval < 1E-05)

Base call quality data from DBCLS SRA