DRX131671
Illumina HiSeq 1500 paired end sequencing of SAMD00127798

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
E10.5 embryos
NA
NA

Attributes by original data submitter

Sample

sample_name
Mm_E10_rep2
dev_stage
E10.5
replicate
biological replicate 2
tissue_type
embryo

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
75427040
Reads aligned (%)
97.3
Duplicates removed (%)
57.8
Number of peaks
30142 (qval < 1E-05)

mm9

Number of total reads
75427040
Reads aligned (%)
97.2
Duplicates removed (%)
57.9
Number of peaks
30100 (qval < 1E-05)

Base call quality data from DBCLS SRA