DRX131667
Illumina HiSeq 1500 paired end sequencing of SAMD00127794

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
E9.5 embryos
NA
NA

Attributes by original data submitter

Sample

sample_name
Mm_E9_rep1
dev_stage
E9.5
replicate
biological replicate 1
tissue_type
embryo

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
68139966
Reads aligned (%)
91.3
Duplicates removed (%)
48.0
Number of peaks
14605 (qval < 1E-05)

mm9

Number of total reads
68139966
Reads aligned (%)
91.2
Duplicates removed (%)
48.1
Number of peaks
14455 (qval < 1E-05)

Base call quality data from DBCLS SRA