DRX130658
Illumina HiSeq 2500 sequencing of SAMD00126053

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
RERF-LC-KJ
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
ATAC-seq_RERF-LC-KJ_24h_G12_Quinacrine dihydrochloride hydrate_1.9
cell_line
RERF-LC-KJ

Sequenced DNA Library

library_name
ATAC-seq_RERF-LC-KJ_24h_G12_Quinacrine dihydrochloride hydrate_1.9
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq library is constructed according to the original ATAC-seq protocol (Buenrostro et al. 2013) with some modifications.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23236233
Reads aligned (%)
98.5
Duplicates removed (%)
93.3
Number of peaks
1985 (qval < 1E-05)

hg19

Number of total reads
23236233
Reads aligned (%)
98.6
Duplicates removed (%)
93.4
Number of peaks
2046 (qval < 1E-05)

Base call quality data from DBCLS SRA