DRX130583
Illumina HiSeq 2500 sequencing of SAMD00125978

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
RERF-LC-KJ
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
ATAC-seq_RERF-LC-KJ_24h_A07_IC 261 (Inhibitor_CK-1delta_epsilon)_0.51
cell_line
RERF-LC-KJ

Sequenced DNA Library

library_name
ATAC-seq_RERF-LC-KJ_24h_A07_IC 261 (Inhibitor_CK-1delta/epsilon)_0.51
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq library is constructed according to the original ATAC-seq protocol (Buenrostro et al. 2013) with some modifications.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34520467
Reads aligned (%)
93.6
Duplicates removed (%)
93.9
Number of peaks
2480 (qval < 1E-05)

hg19

Number of total reads
34520467
Reads aligned (%)
93.7
Duplicates removed (%)
94.0
Number of peaks
2486 (qval < 1E-05)

Base call quality data from DBCLS SRA