DRX130534
Illumina HiSeq 2500 sequencing of SAMD00125929

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
RERF-LC-Ad2
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
ATAC-seq_RERF-LC-Ad2_24h_E04_2 and 3-Dimethoxy-1 and 4-naphthoquinone_2.6
cell_line
RERF-LC-Ad2

Sequenced DNA Library

library_name
"ATAC-seq_RERF-LC-Ad2_24h_E04_2,3-Dimethoxy-1,4-naphthoquinone (Modulator_Redox cycling agent)_2.6"
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq library is constructed according to the original ATAC-seq protocol (Buenrostro et al. 2013) with some modifications.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5696148
Reads aligned (%)
96.1
Duplicates removed (%)
48.8
Number of peaks
2333 (qval < 1E-05)

hg19

Number of total reads
5696148
Reads aligned (%)
95.8
Duplicates removed (%)
49.1
Number of peaks
2327 (qval < 1E-05)

Base call quality data from DBCLS SRA