DRX130530
Illumina HiSeq 2500 sequencing of SAMD00125925

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
RERF-LC-Ad2
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
ATAC-seq_RERF-LC-Ad2_24h_D12_Tofacitinib citrate (CP-690550 citrate)_2
cell_line
RERF-LC-Ad2

Sequenced DNA Library

library_name
ATAC-seq_RERF-LC-Ad2_24h_D12_Tofacitinib citrate (CP-690550 citrate)_2
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq library is constructed according to the original ATAC-seq protocol (Buenrostro et al. 2013) with some modifications.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4650571
Reads aligned (%)
98.1
Duplicates removed (%)
55.5
Number of peaks
3778 (qval < 1E-05)

hg19

Number of total reads
4650571
Reads aligned (%)
97.9
Duplicates removed (%)
55.7
Number of peaks
3787 (qval < 1E-05)

Base call quality data from DBCLS SRA