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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: RERF-LC-Ad2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX130512
Illumina HiSeq 2500 sequencing of SAMD00125907
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Lung
Cell type
RERF-LC-Ad2
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
sample_name
ATAC-seq_RERF-LC-Ad2_24h_C06_Lometrexol hydrate_0.036
cell_line
RERF-LC-Ad2
Sequenced DNA Library
library_name
ATAC-seq_RERF-LC-Ad2_24h_C06_Lometrexol hydrate_0.036
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq library is constructed according to the original ATAC-seq protocol (Buenrostro et al. 2013) with some modifications.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
12483089
Reads aligned (%)
97.3
Duplicates removed (%)
56.9
Number of peaks
7703 (qval < 1E-05)
hg19
Number of total reads
12483089
Reads aligned (%)
97.0
Duplicates removed (%)
57.2
Number of peaks
7705 (qval < 1E-05)
Base call quality data from
DBCLS SRA