DRX130506
Illumina HiSeq 2500 sequencing of SAMD00125901

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
RERF-LC-Ad2
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
ATAC-seq_RERF-LC-Ad2_24h_B12_Rosiglitazone Hydrochloride_2
cell_line
RERF-LC-Ad2

Sequenced DNA Library

library_name
ATAC-seq_RERF-LC-Ad2_24h_B12_Rosiglitazone Hydrochloride_2
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq library is constructed according to the original ATAC-seq protocol (Buenrostro et al. 2013) with some modifications.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6814511
Reads aligned (%)
98.3
Duplicates removed (%)
64.0
Number of peaks
4551 (qval < 1E-05)

hg19

Number of total reads
6814511
Reads aligned (%)
98.1
Duplicates removed (%)
64.2
Number of peaks
4536 (qval < 1E-05)

Base call quality data from DBCLS SRA