DRX129563
Illumina HiSeq 2500 sequencing of SAMD00124958

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
NCI-H1703
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

sample_name
ATAC-seq_H1703_24h_E07_Rotenone (Modulator_Mitochondria)_0.16
cell_line
H1703

Sequenced DNA Library

library_name
ATAC-seq_H1703_24h_E07_Rotenone (Modulator_Mitochondria)_0.16
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq library is constructed according to the original ATAC-seq protocol (Buenrostro et al. 2013) with some modifications.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14634059
Reads aligned (%)
98.5
Duplicates removed (%)
79.6
Number of peaks
3932 (qval < 1E-05)

hg19

Number of total reads
14634059
Reads aligned (%)
98.2
Duplicates removed (%)
79.7
Number of peaks
3997 (qval < 1E-05)

Base call quality data from DBCLS SRA