DRX129373
Illumina HiSeq 2500 sequencing of SAMD00124768

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
NCI-H1648
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
ATAC-seq_H1648_24h_E04_2 and 3-Dimethoxy-1 and4-naphthoquinone (Modulator_Redox cycling agent)_2.6
cell_line
H1648

Sequenced DNA Library

library_name
"ATAC-seq_H1648_24h_E04_2,3-Dimethoxy-1,4-naphthoquinone (Modulator_Redox cycling agent)_2.6"
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq library is constructed according to the original ATAC-seq protocol (Buenrostro et al. 2013) with some modifications.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4563629
Reads aligned (%)
97.3
Duplicates removed (%)
68.4
Number of peaks
2353 (qval < 1E-05)

hg19

Number of total reads
4563629
Reads aligned (%)
97.3
Duplicates removed (%)
68.5
Number of peaks
2385 (qval < 1E-05)

Base call quality data from DBCLS SRA