DRX128273
Illumina HiSeq 2500 sequencing of SAMD00123668

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
NCI-H1648
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
ATAC-seq_H1648_72h_C08_Nocodazole (Inhibitor_beta-tubulin)_0.1
cell_line
H1648

Sequenced DNA Library

library_name
ATAC-seq_H1648_72h_C08_Nocodazole (Inhibitor_beta-tubulin)_0.1
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq library is constructed according to the original ATAC-seq protocol (Buenrostro et al. 2013) with some modifications.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13655550
Reads aligned (%)
98.2
Duplicates removed (%)
58.7
Number of peaks
6764 (qval < 1E-05)

hg19

Number of total reads
13655550
Reads aligned (%)
98.0
Duplicates removed (%)
59.1
Number of peaks
6787 (qval < 1E-05)

Base call quality data from DBCLS SRA