DRX128103
Illumina HiSeq 2500 sequencing of SAMD00123498

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
NCI-H1648
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
ATAC-seq_H1648_24h_C11_Droxinostat (Inhibitor_HDAC3 and HDAC6 and HDAC8)_0.1
cell_line
H1648

Sequenced DNA Library

library_name
ATAC-seq_H1648_24h_C11_Droxinostat (Inhibitor_HDAC3, HDAC6, HDAC8)_0.1"
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq library is constructed according to the original ATAC-seq protocol (Buenrostro et al. 2013) with some modifications.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
3910182
Reads aligned (%)
98.1
Duplicates removed (%)
54.4
Number of peaks
2066 (qval < 1E-05)

hg19

Number of total reads
3910182
Reads aligned (%)
97.9
Duplicates removed (%)
54.6
Number of peaks
2062 (qval < 1E-05)

Base call quality data from DBCLS SRA