DRX122405
Illumina MiSeq paired end sequencing of SAMD00117205

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Lymphoid-primed multipotent progenitors
NA
NA

Attributes by original data submitter

Sample

sample_name
ATAC-IRF8low-LMPP_rep2_S1_L002
cell_type
IRF8 low LMPP
replicate
replicate 2

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22861394
Reads aligned (%)
94.3
Duplicates removed (%)
39.0
Number of peaks
38236 (qval < 1E-05)

mm9

Number of total reads
22861394
Reads aligned (%)
94.2
Duplicates removed (%)
39.1
Number of peaks
38256 (qval < 1E-05)

Base call quality data from DBCLS SRA