DRX118958
NextSeq 500 paired end sequencing of SAMD00109211 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

sample_name
P1_f_4-3
antibody
H3K4me3
dev_stage
P1
sex
female

Sequenced DNA Library

library_name
ChIP_P1o_H3K4me3_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27524478
Reads aligned (%)
96.4
Duplicates removed (%)
34.8
Number of peaks
31661 (qval < 1E-05)

mm9

Number of total reads
27524478
Reads aligned (%)
96.3
Duplicates removed (%)
34.9
Number of peaks
31607 (qval < 1E-05)

Base call quality data from DBCLS SRA