DRX118957
NextSeq 500 paired end sequencing of SAMD00109210 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

sample_name
P1_f_4-1
antibody
H3K4me1
dev_stage
P1
sex
female

Sequenced DNA Library

library_name
ChIP_P1o_H3K4me1_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29898726
Reads aligned (%)
98.0
Duplicates removed (%)
24.8
Number of peaks
5968 (qval < 1E-05)

mm9

Number of total reads
29898726
Reads aligned (%)
97.9
Duplicates removed (%)
24.9
Number of peaks
6115 (qval < 1E-05)

Base call quality data from DBCLS SRA