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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: Primordial germ cells
ATCC
MeSH
RIKEN BRC
DRX118945
NextSeq 500 paired end sequencing of SAMD00109205 rep2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Embryo
Cell type
Primordial germ cells
NA
NA
Attributes by original data submitter
Sample
sample_name
e13_m_27-3
antibody
H3K27me3
cell_type
primordial germ cell
dev_stage
E13.5
sex
male
Sequenced DNA Library
library_name
ChIP_e13.5_male_H3K27me3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
32328577
Reads aligned (%)
97.2
Duplicates removed (%)
23.5
Number of peaks
149 (qval < 1E-05)
mm9
Number of total reads
32328577
Reads aligned (%)
97.1
Duplicates removed (%)
23.6
Number of peaks
139 (qval < 1E-05)
Base call quality data from
DBCLS SRA